STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0964Putative Histidine kinase, contains GAF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1002 aa)    
Predicted Functional Partners:
NIDE2070
Protein of unknown function, putative Response regulator with PAS domain S-box; No homology to any previously reported sequences; 14982921, 15009198, 16176121, 18076326, 7699720, 9301332, 9382818.
 
 
 0.797
NIDE2657
Putative Chemotaxis regulator CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.784
NIDE0963
Protein of unknown function, contains acyl transferase and methyltransferase regions; No homology to any previously reported sequences; 2071574, 7893120.
 
    0.772
NIDE1858
Putative Response regulator, CheY-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.772
NIDE2412
Signal transduction response regulator; Function of strongly homologous gene; regulator.
 
 
 0.771
NIDE3585
Putative Response regulator, CheY-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
   0.770
NIDE0858
Putative Phosphate regulon transcriptional regulatory protein phoB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 0.768
NIDE2651
Putative Response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
 
 0.763
phoB
Phosphate regulon transcriptional regulator PhoB; Function of strongly homologous gene; regulator.
 
 
 0.762
NIDE4086
Putative Response regulator, CheY-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.759
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.