STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0974Homologs of previously reported genes of unknown function. (137 aa)    
Predicted Functional Partners:
NIDE4267
Homologs of previously reported genes of unknown function.
  
     0.501
NIDE3308
Homologs of previously reported genes of unknown function.
  
     0.484
NIDE3936
Homologs of previously reported genes of unknown function.
  
     0.480
NIDE0817
Homologs of previously reported genes of unknown function.
  
     0.476
NIDE3312
Homologs of previously reported genes of unknown function; 11278909.
  
     0.470
NIDE3311
Homologs of previously reported genes of unknown function; 11278909.
  
     0.466
NIDE3794
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.434
NIDE2908
Homologs of previously reported genes of unknown function.
  
     0.419
NIDE0254
Peptidase M24; Function of strongly homologous gene; enzyme.
  
     0.409
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.