Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0994Homologs of previously reported genes of unknown function. (488 aa)    
Predicted Functional Partners:
NIDE1026
Exported protein of unknown function; No homology to any previously reported sequences; 12625841.
 
     0.790
NIDE4185
Putative VacJ-like lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
   
 
 0.762
NIDE0806
Homologs of previously reported genes of unknown function.
  
    0.612
NIDE0995
Protein of unknown function; No homology to any previously reported sequences.
       0.553
NIDE3775
Putative Cytochrome c552; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
    0.525
NIDE3350
Conserved exported protein of unknown function, putative Cytochrome c; Homologs of previously reported genes of unknown function; 12594933, 16924113, 3881803.
  
    0.463
NIDE2671
Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
    
 
 0.459
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.401
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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