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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1011Putative Peptidyl-prolyl cis-trans isomerase D (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (232 aa)    
Predicted Functional Partners:
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
 
 0.606
NIDE1012
Protein of unknown function, RDD family; No homology to any previously reported sequences.
  
    0.570
NIDE1580
Conserved exported protein of unknown function, putative LPS-assembly protein Imp; Homologs of previously reported genes of unknown function; 12724388, 16861298, 2547691, 7811102.
 
  
 0.566
secG
Preprotein translocase, membrane subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
  
 0.515
NIDE0771
Conserved protein of unknown function, YggT family; Homologs of previously reported genes of unknown function.
  
  
 0.501
mreB
Cell shape determining protein MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
  
    0.482
oxaA
Inner-membrane protein insertion factor OxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
 
  
 0.471
NIDE1014
Putative Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.457
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
 
   0.457
mrdA
Penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
  
  
 0.455
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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