STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1012Protein of unknown function, RDD family; No homology to any previously reported sequences. (181 aa)    
Predicted Functional Partners:
mreB
Cell shape determining protein MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
   0.706
NIDE1014
Putative Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.654
NIDE1015
Putative Cell shape-determining protein MreD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.617
mrdA
Penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
       0.585
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.585
NIDE1011
Putative Peptidyl-prolyl cis-trans isomerase D (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.570
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.