STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE1014Putative Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape. (293 aa)    
Predicted Functional Partners:
mreB
Cell shape determining protein MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
 
 0.993
NIDE1015
Putative Cell shape-determining protein MreD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.974
mrdA
Penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
 
 
 0.974
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.934
NIDE1666
Homologs of previously reported genes of unknown function.
  
 
 0.897
radC
DNA repair protein RadC homolog; Function of strongly homologous gene; factor; Belongs to the UPF0758 family.
  
  
 0.771
radC2
DNA repair protein RadC homolog; Function of strongly homologous gene; cell process; Belongs to the UPF0758 family.
  
  
 0.771
ftsI
Peptidoglycan glycosyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.756
NIDE3351
Conserved protein of unknown function, putative Transcriptional regulator; Homologs of previously reported genes of unknown function; 15062080.
 
 
 
 0.746
maf
Septum formation protein Maf-like; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.688
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.