STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mrdAPenicillin-binding protein 2; Function of strongly homologous gene; enzyme. (623 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.998
ftsW
Cell division protein FtsW; Function of homologous gene experimentally demonstrated in an other organism; cell process; Belongs to the SEDS family.
 
 0.993
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
 
 0.981
NIDE1014
Putative Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.974
NIDE0434
Putative D-alanyl-D-alanine carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S11 family.
 
 
 0.970
mrcA
Penicillin-binding protein 1A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
0.955
mreB
Cell shape determining protein MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
 
 0.953
NIDE3591
Putative Penicillin-binding protein 1B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
0.936
ftsI
Peptidoglycan glycosyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
0.934
NIDE0773
Putative Esterase, beta-lactamase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.914
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.