Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
exbD-2Biopolymer transport protein ExbD; Function of homologous gene experimentally demonstrated in an other organism; transporter. (124 aa)    
Predicted Functional Partners:
exbB-2
Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.996
exbB
Biopolymer transport protein exbB; Function of strongly homologous gene; transporter.
 
 
 0.982
exbB3
Biopolymer transport protein ExbB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.915
NIDE1031
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.903
tolQ
Protein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.846
NIDE3361
Putative Protein TolA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.599
NIDE1034
ABC transporter, ATP-binding component, putative Fe3+ transport system; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
  
  
 0.579
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
     0.562
NIDE1036
ABC transporter, periplasmic binding component, putative Fe3+ transport system; Function of strongly homologous gene; transporter.
  
  
 0.554
NIDE0628
Putative TonB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.552
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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