STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1071Homologs of previously reported genes of unknown function. (84 aa)    
Predicted Functional Partners:
NIDE1072
Homologs of previously reported genes of unknown function.
       0.802
NIDE1554
Conserved protein of unknown function, UPF0150; Homologs of previously reported genes of unknown function.
  
     0.630
NIDE2379
Homologs of previously reported genes of unknown function.
  
     0.626
NIDE2627
Homologs of previously reported genes of unknown function.
  
     0.580
yajD
Conserved protein of unknown function, putative HNH endonuclease; Homologs of previously reported genes of unknown function; 7817395, 7920259, 9358175.
       0.547
NIDE1952
Haemagg_act domain-containing protein; Homologs of previously reported genes of unknown function; 15079085, 16339899, 7519681.
  
     0.520
NIDE1073
Conserved protein of unknown function, DUF1272; Homologs of previously reported genes of unknown function.
       0.512
NIDE1396
Protein of unknown function; No homology to any previously reported sequences.
  
     0.510
NIDE2374
Conserved protein of unknown function, YcfA-like; Homologs of previously reported genes of unknown function.
  
     0.508
NIDE2380
Homologs of previously reported genes of unknown function.
  
     0.494
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.