STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1088Putative Regulatory protein, FmdB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (114 aa)    
Predicted Functional Partners:
NIDE1089
Putative Phosphoribosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.817
NIDE1090
ABC transporter, ATP-binding component, putative Lipoprotein-releasing system protein LolD; Function of strongly homologous gene; transporter.
       0.605
mraZ
Conserved protein of unknown function, Protein MraZ; Homologs of previously reported genes of unknown function; ; Belongs to the MraZ family.
       0.546
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
  
    0.478
NIDE2492
Homologs of previously reported genes of unknown function.
  
     0.416
NIDE2490
Homologs of previously reported genes of unknown function.
  
     0.407
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.