Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE1131Homologs of previously reported genes of unknown function. (891 aa)    
Predicted Functional Partners:
NIDE1132
Putative Glycogen debranching enzyme (archaeal type); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.840
glgP
Glycogen phosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.692
NIDE3903
Alpha-glucan phosphorylase; Function of strongly homologous gene; enzyme.
  
 
 0.692
NIDE1608
Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.608
NIDE1609
Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.608
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.608
NIDE3768
Putative 1,4-alpha-glucan branching enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.608
NIDE1133
Exported protein of unknown function; No homology to any previously reported sequences.
       0.461
NIDE1130
Protein of unknown function; No homology to any previously reported sequences.
       0.425
pgm
Phosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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