Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE1163Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (351 aa)    
Predicted Functional Partners:
NIDE1164
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
   0.960
NIDE1165
Putative Response regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
   0.892
NIDE1110
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.833
NIDE3982
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.832
NIDE0165
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.829
NIDE0586
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
   0.826
NIDE0935
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
 
   0.826
NIDE3247
Response regulator, LuxR family; Function of strongly homologous gene; regulator.
  
   0.826
NIDE0580
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
   0.825
NIDE1484
Putative Response regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
   0.824
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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