Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1189Homologs of previously reported genes of unknown function. (219 aa)    
Predicted Functional Partners:
prmA
Ribosomal protein L11 methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.734
NIDE1188
Conserved protein of unknown function, contains MOSC domain; Homologs of previously reported genes of unknown function; 16784786.
       0.734
NIDE1186
Putative DNA mismatch repair protein, MutS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DNA mismatch repair MutS family.
       0.519
NIDE1185
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.503
NIDE1190
Conserved exported protein of unknown function, DUF323; Homologs of previously reported genes of unknown function.
       0.485
NIDE0676
Putative Outer membrane lipoprotein Slp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.434
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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