STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1279ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme. (322 aa)    
Predicted Functional Partners:
NIDE1278
ABC-type transport system, permease component; Function of strongly homologous gene; transporter.
 
 0.981
NIDE1277
Homologs of previously reported genes of unknown function.
 
  
 0.961
NIDE1276
Homologs of previously reported genes of unknown function.
 
     0.946
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.945
ybbA-2
ABC-type transport system, ATPase component; Function of strongly homologous gene; transporter.
 
   
0.909
yhhJ
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.887
ybbA-3
ABC-type transport system, ATP-binding component; Function of strongly homologous gene; transporter.
 
   
0.754
NIDE3434
Putative ABC transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.606
NIDE1275
Exported protein of unknown function; No homology to any previously reported sequences.
       0.554
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.510
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.