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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter. (241 aa)    
Predicted Functional Partners:
NIDE2642
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.993
NIDE2643
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.993
NIDE1341
Exported protein of unknown function; No homology to any previously reported sequences; 7845226.
    
 0.954
NIDE1342
Homologs of previously reported genes of unknown function.
  
  
 0.948
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
   
  0.935
tolQ
Protein TolQ; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.924
tolR
Protein TolR; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
   
 0.894
cysW
Sulfate/thiosulfate ABC transporter, permease protein CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
      0.887
cysT
Sulfate/thiosulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
 
      0.887
rpoN
RNA polymerase, sigma-54 (sigma N) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.825
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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