STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yhbJConserved exported protein of unknown function UPF0042, predicted P-loop containing ATPase; Displays ATPase and GTPase activities. (293 aa)    
Predicted Functional Partners:
NIDE1345
Ribosomal protein S30Ae-family protein, putative sigma-54 modulation protein; Function of strongly homologous gene; factor.
 
  
 0.943
rng
Ribonuclease G; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 
 0.848
rpoN
RNA polymerase, sigma-54 (sigma N) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
  
 0.674
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.637
NIDE1342
Homologs of previously reported genes of unknown function.
  
    0.565
lptB
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter.
  
    0.557
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
       0.516
NIDE1349
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.516
NIDE1350
Putative Type IV pilus biogenesis protein PilO; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.516
NIDE1347
Protein of unknown function, putative Transcriptional regulator; No homology to any previously reported sequences.
       0.508
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.