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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbJConserved exported protein of unknown function UPF0042, predicted P-loop containing ATPase; Displays ATPase and GTPase activities. (293 aa)    
Predicted Functional Partners:
NIDE1345
Ribosomal protein S30Ae-family protein, putative sigma-54 modulation protein; Function of strongly homologous gene; factor.
 
  
 0.938
rng
Ribonuclease G; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 
 0.882
rpoN
RNA polymerase, sigma-54 (sigma N) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
  
 0.668
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.636
NIDE1342
Homologs of previously reported genes of unknown function.
  
    0.567
lptB
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter.
       0.559
NIDE1351
Putative Type IV pilus assembly protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.527
NIDE1352
Putative Type IV pili biogenesis protein PilQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.527
pilM
Type IV pilus biogenesis protein PilM; Function of strongly homologous gene; structure.
       0.523
NIDE1349
Putative Type IV pilus biogenesis protein PilN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
       0.523
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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