STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1380Homologs of previously reported genes of unknown function. (519 aa)    
Predicted Functional Partners:
rpoH
RNA polymerase, sigma 32 (sigma H) factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
       0.773
NIDE3282
Exported protein of unknown function, contains WD40 repeats; No homology to any previously reported sequences; 1909108.
 
  
  0.624
narK
Nitrate transporter; Function of strongly homologous gene; transporter.
  
    0.531
NIDE1006
Conserved protein of unknown function, contains NHL repeats; Homologs of previously reported genes of unknown function; 10518528, 9868369.
     0.482
NIDE0214
Putative large exoprotein involved in heme utilization or adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
   
    0.479
NIDE0216
Putative Filamentous haemagglutinin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
   
    0.479
NIDE0553
Conserved protein of unknown function, filamentous haemagglutinin family; Homologs of previously reported genes of unknown function; 15079085, 16339899, 7519681.
   
    0.479
NIDE1790
Exported protein of unknown function; No homology to any previously reported sequences.
   
    0.479
NIDE1945
Exported protein of unknown function, contains haemagglutination activity domain; No homology to any previously reported sequences; 15079085, 16339899, 7519681.
   
    0.479
NIDE1946
Protein of unknown function, putative exoprotein of filamentous haemagglutinin family; No homology to any previously reported sequences; 16339899, 2539596, 7519681, 9724625.
   
    0.479
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.