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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1396Protein of unknown function; No homology to any previously reported sequences. (346 aa)    
Predicted Functional Partners:
NIDE1397
Protein of unknown function; No homology to any previously reported sequences.
 
     0.863
NIDE1395
Protein of unknown function; No homology to any previously reported sequences.
 
     0.710
NIDE4189
Homologs of previously reported genes of unknown function.
  
     0.627
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
  
 0.573
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
  
 0.548
NIDE3985
Homologs of previously reported genes of unknown function.
  
     0.546
NIDE2144
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.523
NIDE1399
Putative Thiol:disulfide interchange protein DsbE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.518
NIDE1071
Homologs of previously reported genes of unknown function.
  
     0.510
NIDE4188
Homologs of previously reported genes of unknown function.
  
     0.506
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.