Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE1399Putative Thiol:disulfide interchange protein DsbE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (181 aa)    
Predicted Functional Partners:
NIDE1400
Protein of unknown function; No homology to any previously reported sequences.
       0.714
NIDE1401
Homologs of previously reported genes of unknown function.
       0.641
NIDE1402
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences.
       0.641
NIDE1403
Protein of unknown function; No homology to any previously reported sequences.
       0.641
NIDE1396
Protein of unknown function; No homology to any previously reported sequences.
 
     0.515
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.508
NIDE1397
Protein of unknown function; No homology to any previously reported sequences.
       0.448
ccdA
Cytochrome c biogenesis protein CcdA; Function of strongly homologous gene; enzyme.
 
  
 0.437
NIDE1404
Protein of unknown function; No homology to any previously reported sequences.
       0.417
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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