Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE1429Putative Serine protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (344 aa)    
Predicted Functional Partners:
NIDE0442
Trypsin-like serine peptidase, S1C; Function of strongly homologous gene; enzyme.
  
     0.775
NIDE1430
Putative Outer membrane lipoprotein, Slp family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.520
NIDE3330
Conserved protein of unknown function, SDR family; Homologs of previously reported genes of unknown function; 7742302.
    
 0.436
NIDE1815
Homologs of previously reported genes of unknown function; 9605331.
    
  0.429
rsfS
Conserved protein of unknown function, Iojap family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
   0.403
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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