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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1479Conserved protein of unknown function, putative sterol desaturase; Homologs of previously reported genes of unknown function. (241 aa)    
Predicted Functional Partners:
shc
Squalene-hopene cyclase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.855
NIDE1238
Squalene synthase; Function of strongly homologous gene; enzyme.
  
 
 0.696
crtB
Phytoene synthase; Function of strongly homologous gene; enzyme.
  
 
 0.696
cyp
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.589
NIDE1826
Putative 2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinol hydroxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.589
NIDE3334
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.564
dpm1
Glycosyl transferase, family 2, with GtrA domain; Function of strongly homologous gene; enzyme.
   
   0.508
NIDE4295
Exported protein of unknown function, putative Staphylococcal nuclease; No homology to any previously reported sequences; 17172296, 1896431, 8045422, 9041650.
   
    0.469
NIDE2130
Conserved protein of unknown function, Carboxymuconolactone decarboxylase family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
     0.441
NIDE2522
Sensory response regulator with diguanylate cyclase domain; Function of strongly homologous gene; regulator.
  
  
 0.438
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.