NIDE1507 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NIDE1507

Protein of unknown function, TPR-like; No homology to any previously reported sequences. (266 aa)

Predicted Functional Partners:

NIDE1751

0.774

NIDE1664

0.721

NIDE3411

0.703

NIDE3662

0.702

NIDE0671

0.695

NIDE1961

0.692

NIDE4340

0.660

NIDE2030

0.589

NIDE1955

0.544

NIDE3177

0.509

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NIDE0671	NIDE1507	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	0.695
NIDE0671	NIDE1664	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Exported protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15491159, 1882418, 7667876, 8514798, 9482716.	0.479
NIDE0671	NIDE1751	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	0.702
NIDE0671	NIDE1955	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.	0.409
NIDE0671	NIDE1961	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15451670, 7667876, 9482716.	0.536
NIDE0671	NIDE2030	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.	0.458
NIDE0671	NIDE3177	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Protein of unknown function, contains DnaJ domain; No homology to any previously reported sequences; 12454054, 15170475, 8016869, 9644977.	0.509
NIDE0671	NIDE3411	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15491159, 1882418, 7667876, 9482716.	0.501
NIDE0671	NIDE3662	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.	0.443
NIDE0671	NIDE4340	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15491159, 1882418, 7667876, 9482716.	0.481
NIDE1507	NIDE0671	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 15491159, 1882418, 7667876, 9482716.	0.695
NIDE1507	NIDE1664	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Exported protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 15491159, 1882418, 7667876, 8514798, 9482716.	0.721
NIDE1507	NIDE1751	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.	0.774
NIDE1507	NIDE1955	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.	0.544
NIDE1507	NIDE1961	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15451670, 7667876, 9482716.	0.692
NIDE1507	NIDE2030	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.	0.589
NIDE1507	NIDE3177	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, contains DnaJ domain; No homology to any previously reported sequences; 12454054, 15170475, 8016869, 9644977.	0.509
NIDE1507	NIDE3411	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15491159, 1882418, 7667876, 9482716.	0.703
NIDE1507	NIDE3662	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.	0.702
NIDE1507	NIDE4340	Protein of unknown function, TPR-like; No homology to any previously reported sequences.	Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15491159, 1882418, 7667876, 9482716.	0.660