Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NIDE1519Putative Pytoene desaturase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (436 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Function of strongly homologous gene; enzyme.
  
 0.979
NIDE1522
Putative Beta-phosphoglucomutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.836
NIDE1521
ABC-type transport system, periplasmic binding component; Function of strongly homologous gene; transporter.
       0.820
shc
Squalene-hopene cyclase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.604
udgA
Uracil-DNA glycosylase; Function of strongly homologous gene; enzyme.
       0.561
NIDE1523
Protein of unknown function; No homology to any previously reported sequences; 14731533, 15335710, 1639195, 7531822, 7953536.
       0.528
NIDE0891
Radical SAM protein; Function of strongly homologous gene; enzyme.
 
  
 0.472
NIDE2591
Amine oxidase, flavin-containing; Function of strongly homologous gene; enzyme.
 
   
 0.454
ispA
Geranyltranstransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FPP/GGPP synthase family.
 
   
 0.443
NIDE0847
Putative Cytochrome c biogenesis protein, ResB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.408
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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