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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1540Protein of unknown function; No homology to any previously reported sequences. (87 aa)    
Predicted Functional Partners:
NIDE1539
Protein of unknown function; No homology to any previously reported sequences.
       0.678
cas3
CRISPR-associated helicase Cas3; Function of strongly homologous gene; cell process.
       0.526
NIDE1542
Putative CRISPR-associated protein Cse1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
       0.526
NIDE1544
Putative CRISPR-associated protein Cse2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
       0.492
NIDE1538
Protein of unknown function; No homology to any previously reported sequences.
       0.434
cse4
CRISPR-associated protein Cse4; Function of strongly homologous gene; cell process.
       0.433
cas5e
CRISPR-associated protein Cas5e; Function of strongly homologous gene; cell process.
       0.433
cse3
CRISPR-associated protein Cse3; Function of strongly homologous gene; cell process.
       0.425
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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