STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1556Putative Serine kinase HipA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (401 aa)    
Predicted Functional Partners:
NIDE1555
Homologs of previously reported genes of unknown function.
   
 
 0.958
NIDE3156
Putative Transcriptional regulator ModE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
 
 0.839
NIDE0660
Conserved protein of unknown function, putative AAA+ superfamily ATPase; Homologs of previously reported genes of unknown function.
  
     0.522
NIDE1265
Conserved protein of unknown function, Fic family; Homologs of previously reported genes of unknown function.
 
     0.500
NIDE1554
Conserved protein of unknown function, UPF0150; Homologs of previously reported genes of unknown function.
  
  
 0.452
NIDE2961
Conserved protein of unknown function, Fic protein family; Homologs of previously reported genes of unknown function.
 
     0.416
NIDE1557
Protein of unknown function; No homology to any previously reported sequences.
       0.410
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.