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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1592Conserved protein of unknown function, DUF369; Homologs of previously reported genes of unknown function. (136 aa)    
Predicted Functional Partners:
NIDE1593
Homologs of previously reported genes of unknown function.
       0.694
NIDE1591
Homologs of previously reported genes of unknown function.
       0.628
NIDE1594
Homologs of previously reported genes of unknown function.
       0.565
NIDE1590
Putative Protein phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.557
NIDE2493
Homologs of previously reported genes of unknown function.
  
     0.545
NIDE1595
Exported protein of unknown function, TPR-like; No homology to any previously reported sequences.
       0.511
bcp
Peroxiredoxin; Function of strongly homologous gene; enzyme.
       0.463
NIDE1589
Exported protein of unknown function; No homology to any previously reported sequences.
       0.438
fbpV
Fructose-1,6-bisphosphatase, class V; Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3- phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).
  
     0.430
NIDE3904
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
  
     0.403
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.