NIDE1610 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIDE1610

Homologs of previously reported genes of unknown function. (275 aa)

Predicted Functional Partners:

NIDE1609

0.804

NIDE1608

0.601

rpoE

0.596

NIDE1606

0.420

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NIDE1606	NIDE1608	NIDE1606	NIDE1608	Homologs of previously reported genes of unknown function.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.529
NIDE1606	NIDE1609	NIDE1606	NIDE1609	Homologs of previously reported genes of unknown function.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.426
NIDE1606	NIDE1610	NIDE1606	NIDE1610	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.420
NIDE1606	rpoE	NIDE1606	NIDE1607	Homologs of previously reported genes of unknown function.	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.529
NIDE1608	NIDE1606	NIDE1608	NIDE1606	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.529
NIDE1608	NIDE1609	NIDE1608	NIDE1609	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.667
NIDE1608	NIDE1610	NIDE1608	NIDE1610	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.601
NIDE1608	rpoE	NIDE1608	NIDE1607	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.808
NIDE1609	NIDE1606	NIDE1609	NIDE1606	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.426
NIDE1609	NIDE1608	NIDE1609	NIDE1608	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.667
NIDE1609	NIDE1610	NIDE1609	NIDE1610	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.804
NIDE1609	rpoE	NIDE1609	NIDE1607	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.669
NIDE1610	NIDE1606	NIDE1610	NIDE1606	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.420
NIDE1610	NIDE1608	NIDE1610	NIDE1608	Homologs of previously reported genes of unknown function.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.601
NIDE1610	NIDE1609	NIDE1610	NIDE1609	Homologs of previously reported genes of unknown function.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.804
NIDE1610	rpoE	NIDE1610	NIDE1607	Homologs of previously reported genes of unknown function.	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.596
rpoE	NIDE1606	NIDE1607	NIDE1606	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	Homologs of previously reported genes of unknown function.	0.529
rpoE	NIDE1608	NIDE1607	NIDE1608	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.808
rpoE	NIDE1609	NIDE1607	NIDE1609	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	Putative Glycosyl hydrolase, family 13; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.669
rpoE	NIDE1610	NIDE1607	NIDE1610	RNA polymerase sigma 24 (sigma E) factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.	Homologs of previously reported genes of unknown function.	0.596