STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1613Transposase (N-terminal fragment); Function of strongly homologous gene; enzyme. (50 aa)    
Predicted Functional Partners:
NIDE1614
Transposase (C-terminal fragment); Function of strongly homologous gene; enzyme.
       0.773
NIDE1615
Protein of unknown function; No homology to any previously reported sequences.
       0.723
NIDE2713
Transposase, IS3/IS911 family; Function of strongly homologous gene; extrachromosomal origin.
  
     0.720
NIDE0912
Transposase, IS3 family; Function of strongly homologous gene; enzyme.
  
     0.603
NIDE2134
Transposase, IS3/IS911 family; Function of strongly homologous gene; extrachromosomal origin.
  
     0.594
NIDE1612
Protein of unknown function; No homology to any previously reported sequences.
       0.586
NIDE3763
Transposase (N-terminal fragment); Function of strongly homologous gene; extrachromosomal origin.
  
     0.523
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.