Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1651Homologs of previously reported genes of unknown function. (147 aa)    
Predicted Functional Partners:
NIDE1650
Protein of unknown function; No homology to any previously reported sequences.
       0.822
NIDE1649
Exported protein of unknown function; No homology to any previously reported sequences.
       0.730
NIDE1648
Homologs of previously reported genes of unknown function.
       0.725
NIDE1647
Homologs of previously reported genes of unknown function.
       0.573
NIDE1646
Exported protein of unknown function; No homology to any previously reported sequences.
       0.414
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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