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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1677Protein of unknown function; No homology to any previously reported sequences. (276 aa)    
Predicted Functional Partners:
NIDE1678
Putative Peptidase M22; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.826
radA
DNA recombination protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.815
NIDE2972
Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.805
rimI
Ribosomal-protein-alanine N-acetyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.758
NIDE1680
Homologs of previously reported genes of unknown function.
       0.623
NIDE1682
Uncharacterized protein; No homology to any previously reported sequences; 2562507, 8591030.
  
  
 0.491
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes.
       0.481
NIDE0666
ABC-type transport system, permease component; Function of strongly homologous gene; transporter.
   
 
 0.478
NIDE0667
ABC-type transport system, permease component; Function of strongly homologous gene; transporter.
   
 
 0.478
NIDE1094
Putative ABC transporter, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
 
 0.478
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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