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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1685Putative Outer membrane protein TolC precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (472 aa)    
Predicted Functional Partners:
NIDE2718
Putative Outer membrane efflux protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
  0.971
NIDE1686
Putative Membrane-fusion protein of multidrug efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.946
ttgC
RND efflux system, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
  
  0.932
NIDE3915
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 
0.929
oprM
RND efflux system, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
  
 
0.913
NIDE3139
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
     
  0.900
acrB2
RND-type permease AcrB; Function of strongly homologous gene; transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.823
ttgA
RND efflux system, membrane fusion protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.802
NIDE3917
RND-type efflux transporter, membrane-fusion protein; Function of strongly homologous gene; transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.780
NIDE1688
DNA-binding response regulator, CheY like; Function of strongly homologous gene; regulator.
       0.773
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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