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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1694Conserved protein of unknown function (C-terminal fragment); Homologs of previously reported genes of unknown function. (70 aa)    
Predicted Functional Partners:
NIDE1693
Conserved protein of unknown function (N-terminal fragment); Homologs of previously reported genes of unknown function.
     0.972
NIDE2505
Putative Transcriptional regulator (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 
 0.487
NIDE0083
Homologs of previously reported genes of unknown function.
  
 
 
 0.482
NIDE3333
Putative HTH-type transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
 
 0.410
NIDE1672
Protein of unknown function, contains DNA binding helix-turn-helix motif; No homology to any previously reported sequences.
    
 
 0.407
NIDE2615
HTH-type transcriptional regulator; Function of strongly homologous gene; regulator.
    
 
 0.407
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.