Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1724Exported protein of unknown function, contains IPT/TIG domains; No homology to any previously reported sequences. (557 aa)    
Predicted Functional Partners:
NIDE1725
Conserved exported protein of unknown function, contains BNR repeats; Homologs of previously reported genes of unknown function; 2562507, 8591030.
  
    0.787
ftsK
DNA translocase FtsK; Function of strongly homologous gene; enzyme.
   
 
 0.443
NIDE4273
Putative ABC-type transport system, ATPase and permease components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.441
NIDE2039
Exported protein of unknown function, contains LysM domain; No homology to any previously reported sequences; 1352512, 1593644, 3622514.
  
     0.429
NIDE3968
Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.428
NIDE1723
Conserved protein of unknown function, contains Endoribonuclease L-PSP domain; Homologs of previously reported genes of unknown function; 10400702, 12515541, 8530410.
       0.424
NIDE2671
Putative Vitamin B12 transporter BtuB precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
    
   0.402
NIDE4079
Putative ABC-type transport system, ATPase and permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.401
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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