Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1759Homologs of previously reported genes of unknown function. (587 aa)    
Predicted Functional Partners:
NIDE1758
Conserved membrane protein of unknown function, DUF125; Homologs of previously reported genes of unknown function.
 
     0.693
NIDE1760
Protein of unknown function; No homology to any previously reported sequences.
       0.680
NIDE4295
Exported protein of unknown function, putative Staphylococcal nuclease; No homology to any previously reported sequences; 17172296, 1896431, 8045422, 9041650.
 
     0.557
NIDE1757
Protein of unknown function; No homology to any previously reported sequences.
       0.540
NIDE3961
Conserved protein of unknown function, putative Phosphohydrolase; Homologs of previously reported genes of unknown function.
  
     0.514
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
    0.511
yhhJ
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
    0.511
NIDE0520
Putative Daunorubicin resistance ABC transporter, membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.511
NIDE1748
Homologs of previously reported genes of unknown function.
  
     0.511
NIDE1761
Homologs of previously reported genes of unknown function; 11761326, 12686102, 12686116.
 
     0.511
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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