STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potAPolyamine ABC transporter, ATP-binding protein PotA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily. (379 aa)    
Predicted Functional Partners:
potB
Polyamine ABC transporter, permease protein PotB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.997
potC
Polyamine ABC transporter, permease protein PotC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.997
potD
Polyamine ABC transporter, periplasmic-binding protein PotD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.989
msbA
Lipid A export ATP-binding/permease protein MsbA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
0.920
cysT
Sulfate/thiosulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
   
 0.915
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
 
      0.899
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.798
cysW
Sulfate/thiosulfate ABC transporter, permease protein CysW; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     0.793
NIDE1035
ABC transporter, permease component, putative Fe3+ transport system; Function of strongly homologous gene; transporter.
 
 0.787
NIDE1797
Protein of unknown function; No homology to any previously reported sequences.
       0.642
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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