STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potBPolyamine ABC transporter, permease protein PotB; Function of homologous gene experimentally demonstrated in an other organism; transporter. (267 aa)    
Predicted Functional Partners:
potC
Polyamine ABC transporter, permease protein PotC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
0.999
potD
Polyamine ABC transporter, periplasmic-binding protein PotD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.999
potA
Polyamine ABC transporter, ATP-binding protein PotA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily.
 0.995
cysA
Sulfate/thiosulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
 
 0.921
NIDE1034
ABC transporter, ATP-binding component, putative Fe3+ transport system; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
 0.902
modC
Molybdate ABC transporter, ATP-binding protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily.
 
 0.878
NIDE3401
Putative ABC-type sugar transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily.
   
 0.675
NIDE1802
Putative Outer membrane protein TolC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.486
NIDE1803
Putative Acriflavine resistance protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.486
NIDE1797
Protein of unknown function; No homology to any previously reported sequences.
       0.456
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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