Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIDE1828Conserved exported protein of unknown function, DUF477; Homologs of previously reported genes of unknown function. (245 aa)    
Predicted Functional Partners:
NIDE1827
Protein of unknown function; No homology to any previously reported sequences.
 
     0.868
NIDE4332
Conserved exported protein of unknown function, LemA-like; Homologs of previously reported genes of unknown function.
 
    0.802
NIDE4331
Conserved membrane protein of unknown function DUF477; Homologs of previously reported genes of unknown function.
  
     0.775
NIDE4330
Homologs of previously reported genes of unknown function.
 
     0.766
NIDE1237
Conserved exported protein of unknown function, Cupredoxin family; Homologs of previously reported genes of unknown function; 1324168, 14673090, 6307356, 7592701, 8083153.
    
   0.727
NIDE0899
Putative Quinol-cytochrome c reductase, cytochrome b subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
    
   0.628
qcrB
Quinol-cytochrome c reductase, fused cytochrome b/c subunit; Function of strongly homologous gene; carrier.
    
   0.628
NIDE3018
Putative L-2-hydroxyglutarate oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.626
NIDE1826
Putative 2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinol hydroxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.558
NIDE1825
Conserved exported protein of unknown function, putative Endonuclease; Homologs of previously reported genes of unknown function.
       0.547
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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