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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1848Homologs of previously reported genes of unknown function. (225 aa)    
Predicted Functional Partners:
NIDE1847
Protein of unknown function; No homology to any previously reported sequences.
       0.826
NIDE3313
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences.
  
     0.768
NIDE3519
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 14572631, 16234932, 16574144, 17227014, 1995346.
  
     0.768
NIDE3937
Exported protein of unknown function, putative Multicopper oxidase; No homology to any previously reported sequences; 11867755, 14572631, 16234932.
  
     0.768
clpS
ATP-dependent Clp protease adapter protein ClpS; Function of strongly homologous gene; regulator; Belongs to the ClpS family.
  
     0.704
NIDE1846
Protein of unknown function; No homology to any previously reported sequences.
       0.568
NIDE3882
Putative Multihaem cytochrome c; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
     0.553
NIDE0563
Radical SAM superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.551
NIDE2037
Homologs of previously reported genes of unknown function.
  
     0.538
NIDE0375
Homologs of previously reported genes of unknown function.
  
     0.509
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.