NIDE1852 protein (Nitrospira defluvii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NIDE1852

Protein of unknown function; No homology to any previously reported sequences. (65 aa)

Predicted Functional Partners:

NIDE1853

0.638

NIDE1854

0.619

NIDE1851

0.528

NIDE1855

0.448

Your Current Organism:

Nitrospira defluvii

NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NIDE1851	NIDE1852	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.528
NIDE1851	NIDE1853	Protein of unknown function; No homology to any previously reported sequences.	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.444
NIDE1851	NIDE1854	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.431
NIDE1852	NIDE1851	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.528
NIDE1852	NIDE1853	Protein of unknown function; No homology to any previously reported sequences.	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.638
NIDE1852	NIDE1854	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.619
NIDE1852	NIDE1855	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.448
NIDE1853	NIDE1851	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Protein of unknown function; No homology to any previously reported sequences.	0.444
NIDE1853	NIDE1852	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Protein of unknown function; No homology to any previously reported sequences.	0.638
NIDE1853	NIDE1854	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Protein of unknown function; No homology to any previously reported sequences.	0.801
NIDE1853	NIDE1855	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Homologs of previously reported genes of unknown function.	0.605
NIDE1854	NIDE1851	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.431
NIDE1854	NIDE1852	Protein of unknown function; No homology to any previously reported sequences.	Protein of unknown function; No homology to any previously reported sequences.	0.619
NIDE1854	NIDE1853	Protein of unknown function; No homology to any previously reported sequences.	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.801
NIDE1854	NIDE1855	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.634
NIDE1855	NIDE1852	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.448
NIDE1855	NIDE1853	Homologs of previously reported genes of unknown function.	Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.605
NIDE1855	NIDE1854	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.634