| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NIDE1853 | NIDE1920 | NIDE1853 | NIDE1920 | Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.401 |
| NIDE1853 | miaB | NIDE1853 | NIDE1919 | Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Isopentenyl-adenosine A37 tRNA methylthiolase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.466 |
| NIDE1853 | pnp | NIDE1853 | NIDE4127 | Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.534 |
| NIDE1853 | rlmN | NIDE1853 | NIDE3728 | Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.668 |
| NIDE1920 | NIDE1853 | NIDE1920 | NIDE1853 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Putative Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.401 |
| NIDE1920 | NIDE1921 | NIDE1920 | NIDE1921 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Exported protein of unknown function; No homology to any previously reported sequences. | 0.569 |
| NIDE1920 | hinT | NIDE1920 | NIDE0988 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Purine nucleoside phosphoramidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.408 |
| NIDE1920 | miaA | NIDE1920 | NIDE3355 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.586 |
| NIDE1920 | miaB | NIDE1920 | NIDE1919 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Isopentenyl-adenosine A37 tRNA methylthiolase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.860 |
| NIDE1920 | pnp | NIDE1920 | NIDE4127 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.411 |
| NIDE1920 | prfA | NIDE1920 | NIDE0977 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Peptide chain release factor RF-1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.402 |
| NIDE1920 | rlmN | NIDE1920 | NIDE3728 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. | 0.603 |
| NIDE1920 | rph | NIDE1920 | NIDE1871 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.422 |
| NIDE1920 | rsmB | NIDE1920 | NIDE0396 | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.624 |
| NIDE1921 | NIDE1920 | NIDE1921 | NIDE1920 | Exported protein of unknown function; No homology to any previously reported sequences. | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.569 |
| NIDE1921 | miaB | NIDE1921 | NIDE1919 | Exported protein of unknown function; No homology to any previously reported sequences. | Isopentenyl-adenosine A37 tRNA methylthiolase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.569 |
| hinT | NIDE1920 | NIDE0988 | NIDE1920 | Purine nucleoside phosphoramidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.408 |
| miaA | NIDE1920 | NIDE3355 | NIDE1920 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Putative tRNA modifying enzyme, MiaB-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.586 |
| miaA | miaB | NIDE3355 | NIDE1919 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Isopentenyl-adenosine A37 tRNA methylthiolase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.942 |
| miaA | rsmB | NIDE3355 | NIDE0396 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.499 |