Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NIDE1954Exported protein of unknown function, OmpA family; No homology to any previously reported sequences; 14763978, 1574003, 16475801, 2202726. (280 aa)    
Predicted Functional Partners:
tolB
Protein TolB precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.802
NIDE3358
Putative Tol-Pal system protein YbgF (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.753
NIDE3357
Putative Tol-Pal system protein YbgF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
  
 0.707
NIDE0388
Exported protein of unknown function, TPR domain; No homology to any previously reported sequences.
 
  
 0.667
NIDE0942
Exported protein of unknown function, OmpA family; No homology to any previously reported sequences.
  
     0.664
glbN
Hemoglobin-like protein HbN (modular protein); Function of strongly homologous gene; carrier.
      
 0.627
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
      
 0.572
flgE
Flagellar hook protein FlgE; Function of homologous gene experimentally demonstrated in an other organism; structure.
   
 
 0.483
NIDE1955
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15451670, 1882418, 7667876, 9482716.
  
    0.453
NIDE3044
Putative Outer membrane protein assembly factor YaeT precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.452
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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