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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1961Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15451670, 7667876, 9482716. (1045 aa)    
Predicted Functional Partners:
NIDE1402
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences.
 
     0.762
NIDE1751
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 14659697, 1882418, 7667876, 9482716.
  
     0.716
NIDE1962
Exported protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.
 
     0.700
NIDE2030
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.
  
     0.698
NIDE1507
Protein of unknown function, TPR-like; No homology to any previously reported sequences.
  
     0.692
NIDE0551
Conserved protein of unknown function, Tetratricopeptide repeat protein; Homologs of previously reported genes of unknown function; 14659697, 1882418, 7667876, 9482716.
  
     0.675
NIDE3282
Exported protein of unknown function, contains WD40 repeats; No homology to any previously reported sequences; 1909108.
 
 0.664
NIDE3096
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 1882418, 7667876, 9482716.
  
     0.643
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.539
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.538
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.