Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1962Exported protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716. (555 aa)    
Predicted Functional Partners:
NIDE1961
Conserved exported protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 14659697, 15451670, 7667876, 9482716.
 
 
   0.740
NIDE3440
Conserved protein of unknown function, TPR-like; Homologs of previously reported genes of unknown function; 15223324, 1882418, 7667876, 8722778, 9482716.
 
 
 
 0.696
degQ
Protease DegQ; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.597
NIDE1061
Conserved protein of unknown function, contains TPR repeats; Homologs of previously reported genes of unknown function.
  
     0.539
NIDE1963
Exported protein of unknown function; No homology to any previously reported sequences.
       0.517
NIDE3274
Protein of unknown function, contains TPR repeats; No homology to any previously reported sequences; 16893176, 7667876, 9482716.
  
     0.492
NIDE4395
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 7667876, 9482716.
  
 
   0.490
NIDE3065
Putative Murein hydrolase EnvC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
 
 
   0.487
NIDE0948
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 11777911, 14659697, 15223324, 1882418, 7667876, 9482716.
  
 
   0.460
NIDE3180
Protein of unknown function, TPR-like; No homology to any previously reported sequences; 1882418, 7667876, 9482716.
  
     0.444
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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