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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1981Conserved exported protein of unknown function, COG3755; Homologs of previously reported genes of unknown function. (135 aa)    
Predicted Functional Partners:
NIDE1982
Conserved protein of unknown function, COG3518; Homologs of previously reported genes of unknown function; 3520236, 19284603.
  
    0.600
NIDE1983
Conserved protein of unknown function, COG3519; Homologs of previously reported genes of unknown function; 16763151, 19284603.
       0.596
NIDE1984
Conserved protein of unknown function, COG3520; Homologs of previously reported genes of unknown function; 16763151, 19284603.
       0.596
NIDE1980
Protein of unknown function, putative Lysozyme; No homology to any previously reported sequences; 7624375, 8535779.
       0.582
clpV1
Type VI secretion ATPase, ClpV1 family; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ClpA/ClpB family.
  
    0.543
NIDE1986
Protein of unknown function; No homology to any previously reported sequences.
       0.417
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.