Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NIDE1983Conserved protein of unknown function, COG3519; Homologs of previously reported genes of unknown function; 16763151, 19284603. (604 aa)    
Predicted Functional Partners:
NIDE1984
Conserved protein of unknown function, COG3520; Homologs of previously reported genes of unknown function; 16763151, 19284603.
  
 0.984
NIDE2011
Homologs of previously reported genes of unknown function.
 
  
 0.978
NIDE1982
Conserved protein of unknown function, COG3518; Homologs of previously reported genes of unknown function; 3520236, 19284603.
 
  
 0.970
NIDE1975
Conserved protein of unknown function, ImpE/SciE-like; Homologs of previously reported genes of unknown function; 12580282.
 
    0.948
clpV1
Type VI secretion ATPase, ClpV1 family; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ClpA/ClpB family.
 
  
 0.939
NIDE1972
Conserved protein of unknown function, COG3455; Homologs of previously reported genes of unknown function.
 
  
 0.938
NIDE1978
Conserved protein of unknown function, COG3517; Homologs of previously reported genes of unknown function; 16763151, 8573354, 19284603.
 
  
 0.919
NIDE1987
Conserved protein of unknown function, Rhs element Vgr protein family; Homologs of previously reported genes of unknown function; 16763151, 9696756, 19284603.
 
  
 0.916
NIDE1974
Protein of unknown function, COG3913; No homology to any previously reported sequences.
 
  
 0.889
NIDE1979
Conserved protein of unknown function, COG3157; Homologs of previously reported genes of unknown function; 19284603.
 
  
 0.886
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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