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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1987Conserved protein of unknown function, Rhs element Vgr protein family; Homologs of previously reported genes of unknown function; 16763151, 9696756, 19284603. (750 aa)    
Predicted Functional Partners:
NIDE2011
Homologs of previously reported genes of unknown function.
 
  
 0.977
NIDE1984
Conserved protein of unknown function, COG3520; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
  
 0.964
NIDE1977
Conserved protein of unknown function, COG3516; Homologs of previously reported genes of unknown function; 12580282, 16763151.
 
  
 0.932
NIDE1983
Conserved protein of unknown function, COG3519; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
  
 0.926
clpV1
Type VI secretion ATPase, ClpV1 family; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ClpA/ClpB family.
 
  
 0.924
NIDE1979
Conserved protein of unknown function, COG3157; Homologs of previously reported genes of unknown function; 19284603.
 
  
 0.923
NIDE1982
Conserved protein of unknown function, COG3518; Homologs of previously reported genes of unknown function; 3520236, 19284603.
 
  
 0.922
NIDE1972
Conserved protein of unknown function, COG3455; Homologs of previously reported genes of unknown function.
  
 0.921
NIDE1992
Homologs of previously reported genes of unknown function.
 
  
 0.921
NIDE1990
Homologs of previously reported genes of unknown function.
 
  
 0.917
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.