STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1990Homologs of previously reported genes of unknown function. (374 aa)    
Predicted Functional Partners:
NIDE1992
Homologs of previously reported genes of unknown function.
 
  
 0.952
NIDE1987
Conserved protein of unknown function, Rhs element Vgr protein family; Homologs of previously reported genes of unknown function; 16763151, 9696756, 19284603.
 
  
 0.917
NIDE1988
Homologs of previously reported genes of unknown function.
  
    0.834
NIDE2011
Homologs of previously reported genes of unknown function.
 
  
 0.834
NIDE1984
Conserved protein of unknown function, COG3520; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
    0.820
NIDE1972
Conserved protein of unknown function, COG3455; Homologs of previously reported genes of unknown function.
 
    0.812
NIDE1983
Conserved protein of unknown function, COG3519; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
    0.810
NIDE1971
Conserved protein of unknown function, COG3522; Homologs of previously reported genes of unknown function.
 
    0.792
NIDE1973
Conserved membrane protein of unknown function, IcmF-related; Homologs of previously reported genes of unknown function; 19284603.
 
    0.791
NIDE1989
Homologs of previously reported genes of unknown function.
  
    0.791
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.