STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE1992Homologs of previously reported genes of unknown function. (335 aa)    
Predicted Functional Partners:
NIDE1990
Homologs of previously reported genes of unknown function.
 
  
 0.952
NIDE1987
Conserved protein of unknown function, Rhs element Vgr protein family; Homologs of previously reported genes of unknown function; 16763151, 9696756, 19284603.
 
  
 0.920
NIDE1989
Homologs of previously reported genes of unknown function.
  
    0.776
NIDE1991
Homologs of previously reported genes of unknown function.
  
    0.776
NIDE2011
Homologs of previously reported genes of unknown function.
 
    0.754
NIDE1984
Conserved protein of unknown function, COG3520; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
    0.744
NIDE1973
Conserved membrane protein of unknown function, IcmF-related; Homologs of previously reported genes of unknown function; 19284603.
 
  
 0.736
NIDE1972
Conserved protein of unknown function, COG3455; Homologs of previously reported genes of unknown function.
 
    0.732
NIDE1983
Conserved protein of unknown function, COG3519; Homologs of previously reported genes of unknown function; 16763151, 19284603.
 
     0.727
NIDE1971
Conserved protein of unknown function, COG3522; Homologs of previously reported genes of unknown function.
 
    0.717
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.