STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2008Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (463 aa)    
Predicted Functional Partners:
NIDE2010
Homologs of previously reported genes of unknown function; 11777911, 15066636, 15223324, 8266097.
 
     0.884
NIDE0638
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
 
 
 0.564
NIDE0644
TonB-dependent siderophore receptor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 
 0.523
NIDE0650
TonB-dependent receptor; Function of strongly homologous gene; putative receptor.
  
 
 
 0.471
NIDE2604
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.465
NIDE1975
Conserved protein of unknown function, ImpE/SciE-like; Homologs of previously reported genes of unknown function; 12580282.
  
     0.449
NIDE1979
Conserved protein of unknown function, COG3157; Homologs of previously reported genes of unknown function; 19284603.
  
     0.435
NIDE1973
Conserved membrane protein of unknown function, IcmF-related; Homologs of previously reported genes of unknown function; 19284603.
 
     0.428
NIDE0217
Putative Hemolysin activation/secretion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.426
NIDE2189
Putative Protein TonB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.425
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.