STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2010Homologs of previously reported genes of unknown function; 11777911, 15066636, 15223324, 8266097. (668 aa)    
Predicted Functional Partners:
NIDE2008
Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.884
NIDE2590
Exported protein of unknown function, contains Sel1-like repeats; No homology to any previously reported sequences; 15223324.
 
     0.719
NIDE2604
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.592
NIDE4220
Protein of unknown function, contains Sel1-like repeats; No homology to any previously reported sequences; 8722778.
 
     0.554
NIDE4095
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.480
NIDE2802
Homologs of previously reported genes of unknown function.
  
     0.467
NIDE2011
Homologs of previously reported genes of unknown function.
 
   
 0.449
NIDE1185
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.446
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
     0.433
NIDE2224
Putative ATPase, AAA family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 0.422
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.