STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE2010Homologs of previously reported genes of unknown function; 11777911, 15066636, 15223324, 8266097. (668 aa)    
Predicted Functional Partners:
NIDE2008
Putative Outer membrane autotransporter precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.884
NIDE2590
Exported protein of unknown function, contains Sel1-like repeats; No homology to any previously reported sequences; 15223324.
 
     0.719
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
   
 
 0.711
NIDE2604
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.592
NIDE3177
Protein of unknown function, contains DnaJ domain; No homology to any previously reported sequences; 12454054, 15170475, 8016869, 9644977.
 
 
 
 0.564
NIDE4220
Protein of unknown function, contains Sel1-like repeats; No homology to any previously reported sequences; 8722778.
 
     0.554
NIDE0805
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.488
NIDE0815
Putative Hybrid histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.488
NIDE4095
Putative Type IV pilus assembly protein PilV; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.480
NIDE2802
Homologs of previously reported genes of unknown function.
  
     0.467
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.